rs51623506 SNP Detail

Summary

• ID
  rs51623506
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38830699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC TGTGAATCTG CCACGTTCAT
  M
  CGAGTCCCAC AGAACATCCA GGTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss60388786	NES15899109	PERLEGEN	MM_PANEL2	f	SNP		C	C	A	C		A	A		A
ss134843764	ENSMUSSNP3986910	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss320722881	CHEV_3_38675472	CHEVERUD	SCREENING_POP	f	SNP									C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs51623506					SNP	C	C	C	A	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388786	NES15899109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38830699 () rs orientation: forward

Symbol	Name	Function Class
Rr575702	regulatory region 575702	296 bp proximal