rs51621486 SNP Detail

Summary

• ID
  rs51621486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116532661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTATTT CCCACTACCT
  CCGTCAAACG ATTCTTAGCA TCAGTTCTAC TTAATGTTAG GTGAGAGAGA AGGAAGACAT
  CCTAGGTATG CCTGAAGCCT TGCTCTTGTG GTGGCTTTTG TTCTGTTCTG TATTCTGCAA
  GGGATCATGA AGTCATTCTT ACAAGCTAAT ATCTTCTAGC TCCCTATTAG CCCAGACCTG
  Y
  AAGGCATAGC AAAGCCCCAC ACTAGTCTCC AGGTTCCTTA GTACCCAATA ACACGGACCT
  GTAACCCATA TCAAAGCCAC CAGGATCTTC CAGATTACTC CCAATCTAAA GCTAGACACT
  GCTCTCTTCT TTGCCTTCTC TCTGCCTTCA AGAGGTAGTG GCCATGGTAG CTTTGGACTC
  CCCCCAATGC CTCTGGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436371	NES15938060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51621486					SNP	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436371	NES15938060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116532661 () rs orientation: forward

Symbol	Name	Function Class
Agl	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	987 bp downstream
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583772	regulatory region 583772	1608 bp distal
Rr583773	regulatory region 583773	1254 bp distal
Rr583774	regulatory region 583774	1506 bp distal