rs51620859 SNP Detail

Summary

• ID
  rs51620859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48401342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATTTA GAGGGTGTTG
  ACTCATGGCC CTCCTCCATT GTCAGAGCTG GCCGGTGCTG GCTGAGTCAC TGACACCGGC
  TCCCCAGCCC TTTTTCCCTT GGAAATACCC ACACAATAAT CCAGAATGGT CTCCCCATTT
  CAGGACAGCT GCTTTTCCGT GTAGCTTCAC AAGTCAGGGA TTCGAGAAGT TACAATAGAG
  R
  CATCTTTCCA GGGAAGGATA TTGTTCTTCT GAGACTTTCT TTATGATCCA GCATATAGCT
  GATTTTGGTA GAGACTCAAT ATATAACTGA AAAGAATTCC AATTCAGTCA TGGTTTAATG
  CAATGTTTCA TGCCTATATA CCAATCTTCA AGTTGTGTTA CATATTTCTT CTATATCATT
  AGTGTTCTCT TACATGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146277616	ENSMUSSNP6779951	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51620859					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48401342 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68641	predicted gene, 68641			within coordinates
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591970	regulatory region 591970			1679 bp proximal
Rr591971	regulatory region 591971			1931 bp proximal