rs51619523 SNP Detail

Summary

• ID
  rs51619523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104946883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAAAAG CCTGTCTGCA
  GGAGACATGA CTCACACACA ATGCCACAAC GCCACAATGC ACCTCTGAGC ATCATCAGAA
  CGAAAGCGTT CTACCTGCCA AATCTGGGTA AGGAAACGTC TGCTCTTACT CCCCAGTAAC
  TGCAAGGAAA CAAATCAACA TGCGCTCATT TCCACTATTT AGAAGATGGC CAAACACTGC
  Y
  AACTTCTATT TTTCCCATCA CGTCTACACA TTAAGTGTTG GCTTATAAAC AAATGTTTTT
  GCTTATATTT TTCCAATAGT ATTAAGCTAC TATAAAAAAG AAAAGAAAGA CAGACACACA
  TACAACCCAC AACATGAAAG ATGTGAAACT GACGAGAGAA AAAAAGGAGG CATGGGGAAA
  GAAGTAGGTA GAGGAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431131	NES15934555	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51619523					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431131	NES15934555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104946883 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	475 bp proximal
Rr582654	regulatory region 582654	1479 bp proximal