rs51616798 SNP Detail

Summary

• ID
  rs51616798
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAATA AGAGCAGGGC
  TTTTCCTTTG CATTTTTTAT TTACTTATTT CTTTACTACT AATGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGGGGGTA GGATTTGTGC AGACACAGGG
  TCTAAGCCCA ACCTCATTTT GGTTCTCTCC ACTTGCATGG CTTTAACTCA AGTCTATGGG
  S
  TTGTGTGGTA GGCCTCTAGA GCTCACATGG GAGACCTTTG CTGTCTTTGA TCTTCTAGGC
  TTTTAACATG GAAATCATTT ACCAATCCTG TAAGTAGATG CTAATCATAT TCTCACTGAG
  CCCGAGAAGT CAGTCTTCCC CTAGCCACCT CTCTCCTAAG TGCTAGAGGT GACCCAGGAA
  CACAAGCAAC TTAGCACTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320947052	CHEV_3_126362840	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51616798					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			599 bp downstream
Rr397996	regulatory region 397996			1992 bp upstream
Rr584669	regulatory region 584669			1680 bp distal
Rr584670	regulatory region 584670			775 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1940 bp proximal