rs51616222 SNP Detail

Summary

• ID
  rs51616222
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATTGCC AGGAGATCAC
  TGACACTTCC TTCTTAGAGG TACCAGGCCT TGGACCAAAG GCCTCATTTG AGGTTATTTC
  AGACAGTACT AGGCACAACG ATAACTTCTC ACGCAGAAAT CTGAAGAACC TGCTGGTGAT
  GGTAGCCTCC AGGGTTTTGT AGTTGTGGCC ACAGATCAAG GAAGTCGAAC AGTTGCCAAG
  S
  GTGTGTTGAG CACTGTCATA GATAAGTGAA AGCGATGGCC AGAGGAGAAT TGGGTACAGG
  AGAGGAACAC GGGGTTTCTT CTCTGCAGCC ATCTTTATAT ATATCTGGTG GTCAGATATA
  AAAAGACATG AAGTGCGCGT CTCTCCTTCA GAGGTGATGA GGAAAACATC CTGGTGCTGC
  ACTTTCGAGG GTCTTTAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147117531	ENSMUSSNP3751287	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51616222					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691581 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	655 bp distal