rs51611742 SNP Detail

Summary

• ID
  rs51611742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135591800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTTATCTGT TTTCACTATA ATGAAAGTAT TATAATCTTC
  AACACTGGAC CAATACACAA TTTATTAAAA AATCTTGTCG CTCTGGGAGG AAAGAGCAAG
  Y
  ACAATGGAGA AACCAGAACA GTAAAGAAAG CTACTTCAAA GAACAGGTTC AGTCAGTTAC
  ACAAATGTTT TTCCCCTCCA GTCAGCCCGG AAAAATTATG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135929709	ENSMUSSNP4021146	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51611742					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135591800 () rs orientation: forward

Symbol	Name	Function Class
Rr585796	regulatory region 585796	within coordinates
Rr585797	regulatory region 585797	722 bp proximal
Slc39a8	solute carrier family 39 (metal ion transporter), member 8	Intron
Tssr31861	transcription start site region 31861	1034 bp upstream
Tssr31862	transcription start site region 31862	1157 bp upstream