rs51608201 SNP Detail

Summary

• ID
  rs51608201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCAT GTTACTTTCT
  CTGTTTCTTG CTAACTATTT ACCATTTTGG ATATTCAGTC ATAGGTAGGT AGGATTATTT
  AAATCTTCTA AATGTTTTTT TTAAATAAAT TAACTCCCTT ATGTGTGTGT GTGTGTGTTT
  CTGTGTGCAT GTGGAAGTCA AAGGGCAGAG ACAACTTATA GGAGCTTATT CTCTCCTACC
  R
  TGATGATTCT GGACATTGAA CTTGGTTCTA AGGCTTGGCA GCAAGCACCC TTAGCCATGG
  GGTGATTTCA TTGGCCTACA TCAGCATTTA AGTAAATTGT TTACTGGGGA TGTCACTGAA
  GTCAGTCGTT TGTATCATAA ATAACTGGAA ACTCAGTACC TTTAGAAAAG AACTCCTAAA
  CCCTCTTAAC CTACCCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135837718	ENSMUSSNP4548270	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320946909	CHEV_3_126344265	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51608201					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1496 bp distal
Rr584665	regulatory region 584665			205 bp distal
Rr584666	regulatory region 584666			within coordinates
Rr584667	regulatory region 584667			1783 bp proximal