rs51608140 SNP Detail

Summary

• ID
  rs51608140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAATGATC AATACTTTGT TAAATTATCT TTTCCGTTGC
  TCCTATACAG GAGCTTTCCT CTGAATCCCA GTATTTGCTT GGTAACATTC AAAAGAAGCA
  R
  TGAGGAAGGG GGCTGCTCTG GGAATGATTG CTTTCAAATG TCTATTTGGG CTGTAGAAAT
  GGCGGTAAAG AAACACCTCT CTGCAGTCTC TGGTGGCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135210122	ENSMUSSNP5008651	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320783878	CHEV_3_58686033	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51608140					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789532 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	275 bp upstream
Rr577289	regulatory region 577289	758 bp proximal
Rr577290	regulatory region 577290	1345 bp proximal