rs51605916 SNP Detail

Summary

• ID
  rs51605916
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36741529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TAAGAATCCT TCCAGCCCAT ATCGGTTTCT TTAATTTCTT
  CACAAACAAA TAAGCTTGTC TCCTGCTCTC CTTGTCTCTT TACAGCTCTA TTTTCATACT
  A
  TTTTTTATTA ATACTCATTT TCTTCAGATT GATAGCATCA TTGTCCAGGT CCGGCATCTT
  TGTTGCTTTC CCTCACAGAG GGAACCTTTT TTCCTTGTCT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss134787377	ENSMUSSNP5275193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51605916					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36741529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13091	CpG island 13091	1553 bp proximal
Rr575390	regulatory region 575390	1646 bp proximal
Trpc3	transient receptor potential cation channel, subfamily C, member 3	Intron