rs51604440 SNP Detail

Summary

• ID
  rs51604440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGGGA TTTGAACTCG
  GGACCTTTGG AAGAGCAGTC GGCACTCTTA ACCACTGAGC CATCTCGCCA GCCTTGTGAC
  CAATTCTTTA CCACATCAGC TTGAGCACTC CAGAACTGTG GCTTCAATTT TAATGACAAG
  CATTGACACC ACACATAATA TGAAATCTGA CTTCTAAATG CATTTGTTAT TTTCCTTATA
  Y
  TATTCATTTT AGTCAATTAT ATATTTTTTA ATGTGGAAGA TATGTGCAAC TAATATAATC
  AAAACACATT TATCCATGTT GTTAAAAGAA AATATATAAT CTTCCAGATA CCTTTTAAAA
  ATATTTATTC TCGAGAAAGA TGAATAGTGA GCTCCTGTGT GATGACCACA TAAAGGGAGT
  TCACAGAAGG ACATGAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135542872	ENSMUSSNP3828156	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320850235	CHEV_3_100720033	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51604440					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823426 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	890 bp downstream
Rr581925	regulatory region 581925	733 bp proximal
Rr581926	regulatory region 581926	827 bp proximal