rs51599879 SNP Detail

Summary

• ID
  rs51599879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150143327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTCTG ATGCCTTGTT
  ATAGAATTAT AACATAATTA TAATATAATT ATAGAATAAA TAACATAACT AGTTAAAAAA
  TGTCAGCAGA GGCTGGGGGG GTGTAGTTTA GTTGGCAGAG TGTTTGCCTG GCATGTACAG
  ACCCCAAGTT TGATTCCCAG CACTTGGAAA AACTGGGCAT GATGGTGCAC ACTTGTAATC
  Y
  CGGAGGGTGG GGCCAGGAGA ATAAGTTCAA GGTCATTCTC AGCTATTCAG TAAATTAGAG
  TTCAAGGCCA GCCTAGGCTA CATGAGACAG CAAAACAAAA GCCAAATAAT TCATTTATAA
  ATGAAGGTTT TGGGCTGTCC GTCTACTCCA GGTCCCAAGA CAGACTGCTG TTGTCTTTAC
  CCAGTTCTGT GCTTTGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148046411	ENSMUSSNP7214572	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321427864	CHEV_4_149432979	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51599879					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150143327 () rs orientation: forward

Symbol	Name	Function Class
Gm13067	predicted gene 13067	within coordinates
Rr398877	regulatory region 398877	1028 bp upstream
Rr605159	regulatory region 605159	1104 bp distal
Rr605160	regulatory region 605160	798 bp distal
Rr605161	regulatory region 605161	1025 bp proximal