rs51596862 SNP Detail

Summary

• ID
  rs51596862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122211438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTTTTGA ATATTGTGCG ATAACGTCTT CTGCCGGCTC
  GGACTCACAA TCCACTGGAA CAAACTTAAT GTTCTGGAAC CAGGTCACCT TTTAAAGGCG
  R
  CTTCAAAGCA AAACTAAACC AGTGGCCCTT TCACCAGTGA CATCGGTGAA GGGTTAAGCG
  GGGTTATTGT GAAGGTAATA CGCACCCGAG CACAGGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741267	ENSMUSSNP3529006	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320911459	CHEV_3_122120707	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51596862					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122211438 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1968 bp upstream
Cpgi13768	CpG island 13768	1764 bp proximal
Rr397985	regulatory region 397985	1792 bp upstream
Rr584325	regulatory region 584325	1022 bp proximal
Rr584326	regulatory region 584326	1552 bp proximal
Rr584327	regulatory region 584327	2000 bp proximal
Tssr31494	transcription start site region 31494	1950 bp upstream
Tssr31495	transcription start site region 31495	1983 bp upstream