rs51596775 SNP Detail

Summary

• ID
  rs51596775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87130076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAAGCCAC CCGTTACTAT GAAGCTGACG CAAGCTAGAC
  TCCAGGGAGA AGATGTTTCC TGGGCCCCTA GGAAGCCCCT AGAGCTTTGA ACTAATTATG
  Y
  ATTAAAAGTA TAATCACGTG GTTAAGCTGT TCTCCATCCT CAGACTGTGC TCATTGATCA
  GGTTGGTGGA GTTACAACAT TAGCTCATGC TAGACAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146929558	ENSMUSSNP4060556	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51596775					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87130076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594869	regulatory region 594869			881 bp distal
Rr594870	regulatory region 594870			65 bp distal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant