rs51596186 SNP Detail

Summary

• ID
  rs51596186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTAAA TGTTACAACT
  GTTGCTACAG CGAAATAGGA AGAGAGGCAC ACATTATGTC TGTTGCCAAA CAACTCTGGG
  CCCAGAGATG CTGTGTGGGA ACGGCTGGGC AGTTCTTATT ACAAAACATG TTCAGAGTGC
  TTATGAAGGA GGTCTTAAAG GAAGCCAGGT GCCTTATTGA TAAAAACCAA GGACTTCAGA
  R
  CGCATCTTCT GGTAGTACGT GTGTCAGATT CCCCATCTAG GACCATGNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNACC ATTTGCTTAT GACTACTCCA CTTAGTCCTC
  AGCAGAAGAC TAGATGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63332955	NES17507782	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51596186					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332955	NES17507782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230406 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	1130 bp upstream
Cpgi14441	CpG island 14441	904 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	916 bp downstream
Rr595183	regulatory region 595183	1522 bp distal
Rr595184	regulatory region 595184	996 bp distal
Rr595185	regulatory region 595185	732 bp distal
Rr595186	regulatory region 595186	904 bp distal
Rr595187	regulatory region 595187	1302 bp proximal
Tssr42412	transcription start site region 42412	1154 bp upstream
Tssr42413	transcription start site region 42413	1144 bp upstream