rs51594672 SNP Detail

Summary

• ID
  rs51594672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146556602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CCTAAGTCCT GTAAATGCTG
  Y
  CTTGAGCTTC AACGTTGGTA GTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61097606	NES16606914	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51594672					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097606	NES16606914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146556602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	1283 bp proximal
Gm65628	predicted gene, 65628	558 bp downstream
Rr587096	regulatory region 587096	1030 bp proximal
Rr587097	regulatory region 587097	1531 bp proximal
Rr587098	regulatory region 587098	1809 bp proximal
Tssr32369	transcription start site region 32369	1512 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	1520 bp upstream