rs51589395 SNP Detail

Summary

• ID
  rs51589395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTCAAAC CTAGAAGGGA
  GGCACCAAGG AATCACAAAG CATGAGGCCG GTGACCTTGA AACGACCCCC CGGTGGTCTC
  AACTCACTGC AAGACAATGT TTTCCTAATT AAGGTGTAGT GTTCAATGCC ATCTCCAGTT
  TACATAGAAT TCAATGATAG ACCGGTATTT CTTTTCTTAT TATTATTCTT TTAGGTGACA
  Y
  GTCAGTTCTA AACAGATGAC GAGGCACCCC AACAGTGGAA TGGCGGGGTA GGAAAAGTGA
  TCAAACACCA TATGCACAAG GGTTTTAAAG CCCTTTGCAT CAGGGAGCCC AGAATATTGT
  CTCTCAACTA GTCTACGATA TATTGAGTCA TCTCCTTGGA AAGTAGCATT GAAGTTGTAA
  CATTTTGCAC CCATAAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134696994	ENSMUSSNP2929069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51589395					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694341 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	746 bp distal
Rr574325	regulatory region 574325	639 bp distal
Rr574326	regulatory region 574326	within coordinates
Spata16	spermatogenesis associated 16	Intron