rs51581933 SNP Detail

Summary

• ID
  rs51581933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTCTT CCCTCCCTTC
  CCTCCCCTTT CCTTTCCCTA GAAAGCATTG ACTCCATGCC CCTCCCCTCC AAGTCTGCTG
  TCCCAGAAGC CTCTCTTCTA CTTTTAACTG AAACTTTCTC TTTTTCCTGC CACAAGGATT
  CGCCATAGCT TCCCCTGTAC TGCCTGGCTC CCCAGATCAC AAACCAATTC TCCCAAAGCC
  Y
  GTGGCTTCAC CGCCCGCCAC TGGCATTTCA GGGCCACGGA CCACACAAAT GGTGGCAGGT
  GAGTTCTGGA TGAAGTACGA CCAGCTCTGA CATTCAGCAA GCATCAAGCC TGCAATCCAT
  GAAATGGGTT CAGACATGAC CCCTTTCTCA AACAGGAAGG GCAAGGTAGA AAGTGGGGCC
  CTGTGGCTCT GTCCTGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146766655	ENSMUSSNP1035162	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323245284	CHEV_10_8483377	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51581933					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639343 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	560 bp downstream
Rr427376	regulatory region 427376	248 bp distal
Rr427377	regulatory region 427377	54 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1183 bp upstream
Tssr96640	transcription start site region 96640	1320 bp upstream
Tssr96641	transcription start site region 96641	1296 bp upstream
Tssr96642	transcription start site region 96642	1265 bp upstream
Tssr96643	transcription start site region 96643	1209 bp upstream
Tssr96644	transcription start site region 96644	1113 bp upstream
Tssr96645	transcription start site region 96645	963 bp upstream