rs51580438 SNP Detail

Summary

• ID
  rs51580438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAACTG TCAGAGAATC
  TTCAAGTTAA AAGTAAATTT TCCAAGCAAG GAATAGCTTA TGAGGTCATC ACTAAGAAAT
  CACATCCTGG GGTTGGGAAT TGCTGATCGG TGGTAGCATT CTTGCATAGC ATGCCAGTAG
  CCCCACCCAA GAGAATTTAC TTTATAAAAT AACTCAAGTC ATTTATTAAT TGGAGATGGA
  Y
  CCTAGTAAGA CGTCATGTTA TACTCCACCT AGATGCCAAT CATTCCTCTC AGCTGAATCA
  CAAAATGCCC GTATTATTTA GTATATATTT ATTAAATGTT CAAATACATG AATACTGTAA
  CTGGTTCATA AAAAGGGAAG AAATATTTAA AAGTGTAATT ACATGCTAGG CCAAAAGCTG
  ATTTATACAT GAAAATCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52626608	NES15515238	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51580438					SNP	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626608	NES15515238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527633 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1095 bp upstream
Trgj4	T cell receptor gamma joining 4	1251 bp downstream
Tssr118539	transcription start site region 118539	1765 bp downstream
Tssr118540	transcription start site region 118540	1692 bp downstream
Tssr118541	transcription start site region 118541	1636 bp downstream
Tssr118542	transcription start site region 118542	1558 bp downstream
Tssr118543	transcription start site region 118543	1522 bp downstream
Tssr118544	transcription start site region 118544	1502 bp downstream
Tssr118545	transcription start site region 118545	1476 bp downstream
Tssr118546	transcription start site region 118546	1394 bp downstream
Tssr118547	transcription start site region 118547	1321 bp downstream
Tssr118548	transcription start site region 118548	1302 bp downstream
Tssr118549	transcription start site region 118549	724 bp downstream
Tssr118550	transcription start site region 118550	4 bp downstream
Tssr118551	transcription start site region 118551	737 bp upstream
Tssr121588	transcription start site region 121588	1754 bp upstream
Tssr121589	transcription start site region 121589	197 bp upstream
Tssr121590	transcription start site region 121590	861 bp downstream
Tssr121591	transcription start site region 121591	1726 bp downstream