rs51580113 SNP Detail

Summary

• ID
  rs51580113
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139424916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCTTGC TCCTCTCTGC
  CTCAGTGGTC TTGCCTGGGG TCTCGTTTCT AACAAAGGGA GCTGGGTACC CCATCGATCC
  ACTTGGCAGA CGCTCAGAGG AGGCCTGGGG AGCTGCTCTT GGATCTAGCG GAGCCCTGAG
  TGTCTGACGC TGGGCACAGA GGTGGGGAGG GTAAGGCCCA CCTGGCCTGT GCACACAGCC
  D
  GGGGGGGGGG CGGGGAAGAG TCTCCCTTTC TCGTTCTTCC TTTCTTTTTT ATTCCTTCCT
  TAAGAACCAA ACCCCTAAAT GACAATCTCC CACGATTTGG AAAAATGGCT CTCATCCCGT
  GTTCTCTGGA ACATTTTTAT GGCCCTTTCC AGGCAGGGAT GTGACGCCCA GGAACAAGAG
  CCGAGTTCCC AGCCCCAGCC                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss363472607	MGP_WTSI_4_139253520	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	A	T	A	A	T	T	G	T	T	T	A	T	A	T	T	A	T	T	T	T	T	T	A	A	T	A	T	T	A	G	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs51580113					SNP	T	T	A	A	A	T	A	A	T	T	G	T	T	T	A	T	A	T	T	A	T	T	T	T	T	T	A	A	T	A	T	T	A	G	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363472607	MGP_WTSI_4_139253520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139424916 () rs orientation: forward

Symbol	Name	Function Class
Rr603286	regulatory region 603286	98 bp proximal
Rr603287	regulatory region 603287	1039 bp proximal