rs51570385 SNP Detail

Summary

• ID
  rs51570385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127648225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCGTCT TCCCCCTTCT
  CCTCCTTCTT TTCCTCCTCC TCAGAATCCG GGAGTGTCCT GCATTCCAAA GCCCAAATTT
  GCTGGGCACC AGATGGGTCC CAATTGTTGA TATTTTCTTT CTGCTGTTGT TTCCCCATGT
  TTGTCTCTAA TTTTACTAAT CTGGATCTTC TCTCTCCACC TTTTAGTTAA TCTGACTAGA
  Y
  GTTTATCAAG CTTACTGATT TTTTTTCAAC CAACCATTTG TTTCATCGAT TGTCTCTAGT
  TTATTGATTT CAGCCCCAAG TTTGATTATT TCTTGCTGTC TGCTCCTTGA GGATGCGATT
  TCTACTTTTT GTTCTAGAGT TTTCAAGCAT GCTATTAAGT TACTAATATG AGATCTCTCC
  AATATTTTTT TATAAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135873161	ENSMUSSNP4394915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957520	CHEV_3_127557494	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51570385					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127648225 () rs orientation: forward

Symbol	Name	Function Class
Rr584884	regulatory region 584884	1277 bp distal
Rr584885	regulatory region 584885	407 bp distal
Rr584886	regulatory region 584886	1043 bp distal