rs51569233 SNP Detail

Summary

• ID
  rs51569233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128877852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CATCTTTCTA ATTCCTTTCT
  Y
  CTCTACTACA GTGATTCTAG TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147577530	ENSMUSSNP5899365	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320503972	CHEV_2_128861668	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51569233					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128877852 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	90 bp downstream
Rr564832	regulatory region 564832	251 bp distal
Vinac1	vinculin/alpha-catenin family member 1	Intron