rs51566256 SNP Detail

Summary

• ID
  rs51566256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94978793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCTGGT CTTCCAGAGG
  TCCTGAGTTC AATTCCCACC AACCACATGG CAGTTCACAA CCTTTCTTTA AGAAATGGCT
  TTGAGCCGGG CGGTGGTGGC ACACGCCTTT AATCCCCACA CTTGGGAGGC AGAGGCAGGC
  ATATTTCTGA GTTTGAGGCC AGCCTCGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA
  Y
  ACAGAGAAAC CCTGTCTCGG GAAAAAAAAA AGGAAAAGGC TTTGAGCTAT GCAGGAAGAC
  CCAGTCTCAA AACATAGAGT GCCAACTTAG CCTTCACAAA GCTTAGGGTT CAATGCCATC
  AGCACTTAAA TCCAGTGTGC TGGCACACAA TTGTAAACCC AGCACTTGGG AGGCAGAAAC
  TCAATGATCA GTAGTCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135509811	ENSMUSSNP6264818	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51566256					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94978793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1750 bp proximal