rs51564772 SNP Detail

Summary

• ID
  rs51564772
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135709309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGAAA GGGGCTGAAG
  CCGGGAGCCA GGGAGAGACG GGCGCACGCC TACTGCCATC TGCTGCTTAT TATGGTGCCA
  TTCAGAGTCC AACACACCCC ACCTCAGTGC TCTCAGCAGA TGAATGGAGA GAGAAAATGG
  GACATAAGTA CACTATGGGA CGCTATTCAG TTATAAAAAG ATAAAATCTG TCATTTGATG
  M
  AATGGAGCCA AGCTTAGAGG ATATTACGCT AAGTAAAATA ACACAAGACA AATGATGAAT
  GCTCTCACAC ACACAGGAGC AAAGCAAGTT GACCTCACGG ACACAAGAGC AGAGAAGCAA
  CTACCAGAGC CTGAGGTGTG CTGGAGCAAA GAGGAAGAAG CTAACTAGTA TACGATGCAG
  CTAGCTGGAA GGAACACCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555302	ENSMUSSNP1844798	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51564772					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135709309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			441 bp distal
Rr602231	regulatory region 602231			130 bp distal