rs51562156 SNP Detail

Summary

• ID
  rs51562156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGAGT GGGGGTGATA
  GAATCCTCCA TTCCTTGTGG TGAATTTCCC CCAAAGTATG TGCCTGCATT TGCAATGGGG
  AGTCTTAAAA ATAAAAGTAG AATATCCTAG ACCAGGGTCA AGTGTGCAGT CTCCACACTG
  AGGGAAACAA ATAGCCATAG GCGATAGTCT ACATAATGAA ATCCTGTGGC CAGGTGCTCC
  R
  GAGGTTTATC AGAATGTGAT CTGATTAGGA GAGTCAGGGG AAGGATGTGC TATAAATCAA
  GCCCAGAGTC AAATGCTTCT GAGATTGTCC TACCATCCTA GCAAGGGGAA TTTAATATCG
  GGCAGTATTT ACAGTGCTGC CAACTGACTA ACCGAGTGGA TGGGAAGGCA TCTACCAAAA
  GCGCCAGCAT GCTCCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147079123	ENSMUSSNP2432716	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320429670	CHEV_2_101479650	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51562156					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469838 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	118 bp proximal
Tssr25364	transcription start site region 25364	609 bp downstream
Tssr25365	transcription start site region 25365	733 bp downstream
Tssr25366	transcription start site region 25366	1774 bp downstream