rs51559982 SNP Detail

Summary

• ID
  rs51559982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144926569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCCCAC TTTACTTGTG
  AACCCCAGTG CTTTGAAGAT AAATGTTCCC TTCTGATGAG CAGATACTTC TTTAAATAAA
  TAAATAAATA AATAAATAAA TAAATAAACG CTAGATGTTC TGCCATAATC ATGCATTTTT
  CCCCCAGTGA GGGTTTCAGG CTCCTGATTT CTGTTTTGAA AGTTTCTGTG GACATATTAA
  R
  ATACCTTAGA AGGAGATGTC TAGGACAATA TGAACTTTGG ATCACCCGTG AATTCATAAA
  ATGAGAAAGA TCTCATTCAT CTTTGAATCC CAGGTACCCG GCTTTGTGCT TTGCATGAGT
  TAAGCTCTCG ATGGCTGTTT TGTTTATGAT GAAGGCTTTG CTGTCTGGAT TCCAATGGAA
  GGACATCAGA GAGGCAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61094890	NES16604252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51559982					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094890	NES16604252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144926569 () rs orientation: forward

Symbol	Name	Function Class
Rr586766	regulatory region 586766	783 bp distal