rs51559522 SNP Detail

Summary

• ID
  rs51559522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA CAAGTTCTTT TGAAGTAGTT
  Y
  AGGATAGCCC CCAAGCCCAC CGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136115274	ENSMUSSNP595243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321031893	CHEV_3_153605790	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51559522					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648463 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1154 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1718 bp distal
Rr587801	regulatory region 587801	141 bp proximal
Rr587802	regulatory region 587802	1796 bp proximal
Tssr36252	transcription start site region 36252	1599 bp downstream
Tssr36253	transcription start site region 36253	1635 bp downstream
Tssr36254	transcription start site region 36254	1806 bp downstream