rs51555890 SNP Detail

Summary

• ID
  rs51555890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85355194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTCTGT GTTAGCTCCT
  TTGCCCACCC CCACCCCAGA CAACCACGTG ACTGAGATAA GTGCTTCTGC TGCCCTCTGG
  TCACTGATGA GGAAACCCAA GCAGAGAGCC TAGGCCATTT CTCTGAAGTC ACCAACTGGA
  AGACTGCAAA CTGAAATAAG AGTCTCAGCC ATTTTATTGC CTGCAGCACT CTGCCCTCAC
  R
  CTGGCTGGTC AGCCATCTAG ACGCTACAAA CTTCTGTCGG TTTTAATCAT TTGAGTAAGA
  TCCCGTGTCC CAGGCGTTTT ACGCCATGTC CTATTGCAGA AGAAACACCA CGACCAAGGC
  AACTCTGACA AAAGAACGCA TTTATCTGGG GCTTGCTATA GTTGCAGAGG GTTATCCTTT
  ATCAGCTCGG TAGGGAGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906836	NES15957562	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51555890					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906836	NES15957562	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85355194 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	358 bp downstream
Rr633196	regulatory region 633196	within coordinates
Rr633197	regulatory region 633197	1941 bp proximal