rs51544648 SNP Detail

Summary

• ID
  rs51544648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATCTGT TTTTAGATTA
  TGTAGGGATT TGCATTTTTT TTTATTTCAT GAATTTTGGT ATACACAGTT ACGTATATTT
  AATTTTGAAA CAGTAAACAA GTGACTGTAA GTAATCAAAA CTCTCCGTGG CTGGGCTGTT
  TCCTGTACTT CTGAAGCTGT CCGTGAGTTC CTGGCTCAAG CTTATTCCTT CCCAGGCCAA
  S
  AGTCAGTTAC TGTCCCTGAA GATTTTTGGA GTCAAACTCC TTATCAGCCA TCCAGCTTGT
  TTTGAATTTA ACTGGAAGAT CTTCAGTAAT GGAAAACTCA CACACTCATT ATATAGGTTA
  ATTGTAATTT ATTTTGTGTT GCACAATATA GACTCACAGA CCAACAGGCA TTATTTTCTA
  TGTATTAATG AATTATTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135837013	ENSMUSSNP7112004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320946658	CHEV_3_126311181	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51544648					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			924 bp proximal
Rr584653	regulatory region 584653			1135 bp proximal
Tssr31576	transcription start site region 31576			1142 bp downstream