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rs51543048 SNP Detail
Summary
  • ID
    rs51543048
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr8:124921863 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCAAA CCCTGATTAC TGCTGCTGTG
    S
    CCTTTGGTAC TCGGTGTCCC TGAGT                                      
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145843890 ENSMUSSNP5292708 ENSEMBL ENSEMBL_Sanger f SNP C C G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs51543048 SNP C C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:124921863 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42054 predicted gene, 42054 1429 bp upstream
Rr672635 regulatory region 672635 1717 bp distal
Rr672636 regulatory region 672636 994 bp proximal
Rr672637 regulatory region 672637 1737 bp proximal
Tssr80021 transcription start site region 80021 1981 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory