rs51540512 SNP Detail

Summary

• ID
  rs51540512
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119491543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAAACCA AAAAAGAGGG CTGGTGAGAT GGCTCAGTGG
  ATAAGAGCAC CCAACTGCTC TTCTGAAGGT CCGGAGTTCA AATCCCAGCA ATCACACGGT
  A
  GCTCACAACC ATCTGTAACG AGATCTGACA CCTCTTCTGG AGTATCTGAA GACAGCTACC
  GTGTACTTAC ATATAATAAA TAATAAATAT TAAAAAAAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147338434	ENSMUSSNP376352	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51540512					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119491543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12124	CpG island 12124			1510 bp proximal
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1			Intron
				Noncoding-Transcript-Variant
Rr397235	regulatory region 397235			1610 bp upstream
Rr563557	regulatory region 563557			1280 bp proximal
Rr563558	regulatory region 563558			1726 bp proximal
Tssr25825	transcription start site region 25825			1694 bp downstream