rs51538565 SNP Detail

Summary

• ID
  rs51538565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77004343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTCCCA CTGCAGTAGG
  GCCTAATTCC TCAATCTTCA ATTAGCCGAT TGGAGCTCAA CTATGTGTCC AAAACTGCAG
  GCCTCTGCAG GTGGCGGGAT GTAGCCCCCA GGGCTGTCTG TCATTCCTGG GAGAAATCCT
  GAAATGGAGG GGGGCACACC AGGCATCCGG GGGCTTCAGA GTCCGCTGCC TGCCTTCTTC
  R
  AGGTTTGACA CCTCAGGCTG AGGGGAGTCC ACTTCAGAAG AGTTTGGGGA TGGTGAAGGA
  GGAGCAGCAG GAGACAAGCA AGCCTCCTGG TCTTTCCCAG ACACAGGGAA GATTATTCAA
  AGGTGTCAAA GCTACTGACA ATGGAAATCA CCCACAGGAG CTCTCTGCTA TGAATGCAGT
  GTCAGGAAGC AACAGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52373561	NES15269451	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51538565					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373561	NES15269451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77004343 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	1992 bp upstream
Cpgi1754	CpG island 1754	1801 bp distal
Gm67721	predicted gene, 67721	1306 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	1859 bp distal
Rr434421	regulatory region 434421	1653 bp distal
Tssr94211	transcription start site region 94211	1863 bp downstream
Tssr98227	transcription start site region 98227	1985 bp upstream
Tssr98228	transcription start site region 98228	1953 bp upstream