rs51532855 SNP Detail

Summary

• ID
  rs51532855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGCCT GGTTTCTCCA
  AAGCAGAGCC TGAGAGAAAG AGGTTGTCTG AGAGAGCTGG ACGTTGGGTT GGACCAGAGA
  AACAGGAAAA CTGACGAGCT TGGCCTGTTC TGCACGGCAC CGAGGTTTTC CTGACTACAA
  GGGTATGTCT GCAGGGCACA GAAAGGCAGC AGGGAACCCA ACTGAAAGGC TTACAGATTG
  R
  GAATATGTGC AGGAACGGTA AATGGTAACT AACATTTTGC AGCTAAAAAA AAAAAAAAGA
  AGCCGAAGTG ACTTTCTACA TCAATTCAAA AAGTTTTGAA TACCTGTTTT GCTCGTATAC
  CATTGCTAGT ATTTGAAAAT TCGTTTAAAA AGTCAATACA CTGATATAAA ATATTGTTTG
  TCCTAATAAC CCCAAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838290	ENSMUSSNP4697281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320947075	CHEV_3_126364516	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51532855					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			781 bp upstream
Rr397996	regulatory region 397996			316 bp upstream
Rr584671	regulatory region 584671			6 bp distal
Rr584672	regulatory region 584672			264 bp proximal
Rr584673	regulatory region 584673			1657 bp proximal