rs51530672 SNP Detail

Summary

• ID
  rs51530672
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40498835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGGCTTCCAG GAGATGACCT GCAACTCACT GAAGAATGAT
  TGTGGTCTAA CCGAACACCG TATCTGGGCA GCAGGGAAAG ACGTATTAAA ATACAAAAAG
  K
  TTAGCAGGTT GTGAGACACA AGTCTGAGTT GGAATCTGCA TTCTAGTCTC GTTCTGTTGA
  TGCCTGGAGA TGAGATGTGT GGCCAGAAAT TGGATGCGAC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60393556	NES15898188	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	G	T	T
ss135039504	ENSMUSSNP2441963	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs51530672					SNP	T	T	?	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393556	NES15898188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40498835 () rs orientation: forward

Symbol	Name	Function Class
Gm30184	predicted gene, 30184	within coordinates
Rr575816	regulatory region 575816	within coordinates
Rr575817	regulatory region 575817	231 bp distal