rs51530198 SNP Detail

Summary

• ID
  rs51530198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACACCAGG CAAAGATCAC AGACTGCTGG ACTTTTGCAG
  CAAACACATT TCACAGTGCT AGAGGGGTTA CAGCTCAAAT GTCTTGTGTT TGAACACTTG
  R
  TCTGGTGGCA CCACTTTTGG AGACTGTGGA ATCATTGTGA CTGTGTCTAA CCTAGCACAG
  GTGGGTCACC AAGGGTGGGC CTTAAAGGGC CATGTCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135760938	ENSMUSSNP1412242	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320918251	CHEV_3_122940487	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51530198					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	1217 bp distal
Rr584475	regulatory region 584475	1143 bp distal
Rr584476	regulatory region 584476	68 bp distal
Synpo2	synaptopodin 2	1420 bp upstream
Tssr35497	transcription start site region 35497	1447 bp upstream
Tssr35498	transcription start site region 35498	1412 bp upstream