rs51521564 SNP Detail

Summary

• ID
  rs51521564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATGGTT GCTTTCCTAT
  ACCACCTAGG ATCATCTGCC CAGAGGTAGC ACCATCCACA ACGGGATAAG CCCTTCCACA
  TTAAACACCA AATGAGAAAA CGTCTCACAG AGTTGCCTAA AGGCCAATCG AATGGAGGCT
  TTTTCTCAAG GGAGGCTCAA ATGGGATACC CTGGCTTGTG TCAAGTTCAC AAAAAACTAA
  Y
  CAGAACACCC CTTCTATGAG TATTTCATAC ACAGAAATAC AGACAAACAC GCACGGAAGA
  CATAAATTAT GTGTGTTATA TGTGTGTGTA TGTATAATTT ATCTATATAA GTTGCACACA
  TACATAAATA CACAGGAGGC ATACATATAT GTACATTCAC AGACGACATG AATATCAGAT
  AAAATACAAA TACTACATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136111665	ENSMUSSNP2046480	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51521564					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1200 bp proximal
Rr587740	regulatory region 587740			1646 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1502 bp upstream
Tssr36239	transcription start site region 36239			1346 bp upstream