rs51513055 SNP Detail

Summary

• ID
  rs51513055
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94445690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGATG TCAGAAGGAA
  GACAAGTTCC TATAGTATTT CAGTGTTCAA CAATGTGAGT TTAGTAGCCC GGCGGTGGTA
  GCGCACGCCT TTAATCCCAG GACTTGGTAG GCAGAAGCAG GCGGATTTCT GAGTTCAAGG
  CCAGCTTGGT TTACAAAGTG AGTTCCAGGA CAGCCAAGGC TACACAGAGA AACCCTGTCT
  M
  CAAAAACAAA AACAAAAGAA AAAAGAAAGC AAGAAACAGA TAGCCCTGGC CATGTTCAGC
  CTTCTTTCTT CCCTGTGAAC TCTTACAGAT GCCTCTGGCT GTTCTCTCTA CAATAAAAAC
  CTTTTTACCT ATACCATGGA GCGGTCGAAT CAGTTTAGTC ACAGATAGAT ACACAGTGGG
  GCAAGGAATG GCTGGCTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147049630	ENSMUSSNP2628542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321211512	CHEV_4_94224144	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51513055					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94445690 () rs orientation: forward

Symbol	Name	Function Class
Caap1	caspase activity and apoptosis inhibitor 1	657 bp upstream
Cpgi14451	CpG island 14451	484 bp distal
Gm10306	predicted gene 10306	375 bp downstream
Rr595335	regulatory region 595335	167 bp distal
Rr595336	regulatory region 595336	1079 bp proximal
Tssr42442	transcription start site region 42442	651 bp upstream