rs51506586 SNP Detail

Summary

• ID
  rs51506586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101865515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGTCT TGAACTCAGA
  AATCGGCCTG TCTCTGCCTC CCAAGTGCTG GGATTAAAGG CACGAGCCAC CACCGCCTGG
  CCCTGGCCTT ATTCTTGAAT TCAAGATTGT TGTTAAGCTT TTTATTCTCA TAATAACTGA
  GGCTAGTTCA CTTTTCTCTT ACATATGGGG AAACGAAGGC ACAGAGAGAG ATATGAAAGG
  R
  ACTCTCCCAG GATTAGACAG CATGTACTGT ATAAATCCAA ACATATCAGT GCAAAATCTC
  CTCCTCCCAA GTGCTACTTT ATTTTCTGTG ATTTTCAGAA TAAATTATTC ACAGCTGACC
  GTCTTTCAAA CCTCCGCTCA GCCATCCCAG ATCCATAGGC AAGCTTGCAG TCTTGTTAAT
  GTTTAATGAA TACAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147097712	ENSMUSSNP5655353	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320433804	CHEV_2_101875327	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51506586					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101865515 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	1139 bp distal
Rr561614	regulatory region 561614	375 bp distal
Rr561615	regulatory region 561615	1251 bp proximal
Rr561616	regulatory region 561616	1864 bp proximal