rs51504880 SNP Detail

Summary

• ID
  rs51504880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132483811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTGATT TTTTTTTTTC
  CTGGTTTCTT TCTGTCTTCC TGGTTCCTAC ACTCATCCAG GGTACAGAGA TGGGCTTCTA
  ACTAATGCTT TTGTGTTTAT GTTTGTTTGA GGTTTGGTTT TGTTTTCTTT TACATTTATC
  TATTGGGTGG ACAGACACCA CAGAAGACAA ATTGCAGAAA TAAGATTTTC TCCTTCCACC
  R
  TATGGGTTTG GGGAACTGGA CCTCTCGGTG GCAATGTTTT GTGTTTCTTT TCTGGAGTCC
  CAGAGATGGA ACGCGCTCAT TTGAACAACC ACTGTACCTC AGAGCCTTCT ATCTGAGTGT
  CCTGATTGAG TTCGCGAATC TTCCCGACCA CCGGCTCCCT CTCAGTGTCT AGCTTTCATG
  TACTAGATCC TTGTCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147477874	ENSMUSSNP32713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321336213	CHEV_4_132312415	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51504880					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132483811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	403 bp proximal
Gm70165	predicted gene, 70165	1702 bp upstream
Rr601061	regulatory region 601061	1945 bp distal
Rr601062	regulatory region 601062	1746 bp distal
Rr601063	regulatory region 601063	37 bp proximal
Rr601064	regulatory region 601064	742 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	604 bp downstream
Tssr43703	transcription start site region 43703	607 bp downstream
Tssr43704	transcription start site region 43704	662 bp downstream
Tssr43705	transcription start site region 43705	729 bp downstream
Tssr43706	transcription start site region 43706	748 bp downstream