rs51504402 SNP Detail

Summary

• ID
  rs51504402
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTCACA GCGAACAATC
  AGAACAACCA GACTCAGTCA TTTGTTTGTT TGTTTGTTTG TTTTTGTTTT TCGAGACAGG
  GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA
  CTCAGAAATC CGCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGTGTG CGCCACCACC
  G
  CCCAGCCAGA CTCAGTCACC TTATTCCCCC TCCATCCAGT GAGACAACAT CATACAATAT
  TTAAGCCTTT CTGAGAAGTA TTTCTCAATT GCAAATATAT TTCCTTGGGA AAGATCATGC
  AACAGTTTTG TTTGAACTTA GTCCATAAAA AGACACAGAC ACACACACAC ACACACCTCA
  ACTTCTACGG CCACGCTGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146766605	ENSMUSSNP4986836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323245267	CHEV_10_8481302	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51504402					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637268 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	124 bp upstream
Rr427375	regulatory region 427375	54 bp distal
Rr427376	regulatory region 427376	530 bp proximal
Rr427377	regulatory region 427377	2000 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	881 bp downstream
Tssr96639	transcription start site region 96639	878 bp upstream
Tssr96640	transcription start site region 96640	715 bp downstream
Tssr96641	transcription start site region 96641	765 bp downstream
Tssr96642	transcription start site region 96642	784 bp downstream
Tssr96643	transcription start site region 96643	845 bp downstream
Tssr96644	transcription start site region 96644	947 bp downstream
Tssr96645	transcription start site region 96645	1075 bp downstream