rs51504099 SNP Detail

Summary

• ID
  rs51504099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142147527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGATTTC CTATCAATGA
  TTTCATTTCA ATGTACTGTC ATCTACAATT TTGTGACAGG GAAAGTTATA TGGGACAAAC
  CTGGAAGAGG CATGTAGTTT AGCTGGTTTA GATTCTTACA TTTTGGCTAA CTTGAGCTAA
  TGGTATAATT ATGCACAAAT CACCCACATA TTCTAAGACC TTGAAGGAGA TCAGCCTAAT
  K
  AGCATTTCTC AGCCTACGAG ACACAAATTT GGAGAATTGT GTCTACTGAA GTCAGAGGAC
  CATATGTAAC TATGATCATA TATGATCATA CATAGTTACA CATGTAACTA TGATCCAGAA
  TTGTCTGTTC AGATGAAAGT CATGGAGAGA TGATGTTTGA GAGGACCCTG GACTGTTCGG
  GTGGCTGATA ATTCACTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136013506	ENSMUSSNP2076485	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321001611	CHEV_3_142104730	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51504099					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142147527 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	203 bp downstream
Rr586432	regulatory region 586432	1024 bp distal
Rr586433	regulatory region 586433	451 bp proximal
Rr586434	regulatory region 586434	1169 bp proximal
Rr586435	regulatory region 586435	1774 bp proximal