rs51503341 SNP Detail

Summary

• ID
  rs51503341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGGGTT CGCACGGGAA
  CCTCTACAAG GACTTGTTCG TTTGCTGCAG CAAGGAAGTC AGAGAGCCCA AGCTCTGGAG
  CGACAGCCCT GGACTGCACC TCATTCTCCG CCTCTGTCCT TTAATGCTCG TGAGACTGGG
  TAGTCTGCTT GACCCCTCTG AGTCTCACAT TCCCCGTGTG GGAAGTGAGG CTGGCCCTGA
  R
  AGGGATATTT GCTCCAAATT TAGAGGTTGA GGCAGACAGT CTTCTGGCAC AAGAGTCTGC
  TCAGTTCAGA TTCACCACAG CCCAACAGTG AGGCCAGGCT CCTCCAGCCA GGTGCCTGGT
  TTCTCCCTCA CTCTCCATCT GGAATGTTCG CCCTTTCTGG AATCATAGCC TCTAAAACAT
  TTAGACTCCA TGTCTCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557399	ENSMUSSNP2973592	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51503341					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	60 bp distal
Cpgi15094	CpG island 15094	924 bp proximal
Rr367750	regulatory region 367750	1142 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	210 bp distal
Rr602259	regulatory region 602259	410 bp proximal
Rr602260	regulatory region 602260	1344 bp proximal