rs51499664 SNP Detail

Summary

• ID
  rs51499664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172458865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC TGGCCTATCC TTCTGTTTCC
  Y
  AGAACTGTGA CCGGAGGCCT TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013316	PARCsnp_1.20736	PARC_SEQ	INBRED	f	SNP			C	T
ss120015539	PARCsnp_1.10908	PARC_SEQ	INBRED	f	SNP			C	T
ss146197822	ENSMUSSNP406440	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320126687	CHEV_1_174561429	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51499664					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172458865 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	mRNA-UTR
Gm35601	predicted gene, 35601	1731 bp upstream
Rr396594	regulatory region 396594	1595 bp upstream
Rr423641	regulatory region 423641	996 bp proximal
Rr423642	regulatory region 423642	1460 bp proximal
Rr423643	regulatory region 423643	1654 bp proximal
Rr423644	regulatory region 423644	1759 bp proximal
Tssr10245	transcription start site region 10245	1766 bp upstream
Tssr15247	transcription start site region 15247	1493 bp downstream
Tssr15248	transcription start site region 15248	1517 bp downstream
Tssr15249	transcription start site region 15249	1633 bp downstream