rs51496250 SNP Detail

Summary

• ID
  rs51496250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141873554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAATACT GATGATTCAT
  GAACATGGCA TAAATCAAGA TTGCTACCTC GCCAAAACCC AACATTTTGT TTTCAATATT
  CACAAATCAG TGCGGCTAAA ATTCATCAGC AGCCCCTCAC ACATGTGTAA TGAGATCACA
  TCAACTCGCC TCCTGTGACC AAAAGGAAAA GGTGGTTTTC TAAATGGTAA TTCAGATTGG
  R
  CAAATAACAC ACTGGACCCA GTCTTGTAGC CCTGGGCCAT ATTTTGCTCA AAACAAAGGT
  ACACTATGCA GGAATAAAGA AAGCTGAGAA TGGCAGTAAT TAACTTCAAG CTAACTTTTC
  CATAAAAAGC CATTGCCGAT ATGATTTGCT TGCAGCGCGC ACGTAATTTT TTTTTTTTTT
  GCCACACAAT GATCCAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61088448	NES16600632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51496250					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088448	NES16600632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141873554 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Cpgi13885	CpG island 13885	978 bp proximal
Rr586389	regulatory region 586389	569 bp proximal
Rr586390	regulatory region 586390	1410 bp proximal
Rr586391	regulatory region 586391	1506 bp proximal
Rr586392	regulatory region 586392	1665 bp proximal
Tssr35928	transcription start site region 35928	1403 bp downstream
Tssr35929	transcription start site region 35929	1518 bp downstream