rs51496159 SNP Detail

Summary

• ID
  rs51496159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68111746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAGCAG TGTTTCATCA
  GTGGGCTCTA CAGCCTGAGT CTAAGCACCG TAAACCAACT GACTGCAGGC TCCCATCAGT
  ATCATGTGCT GTGTTGATTG ATGTAAGTCT TCATGGTAGC TAAGGTTTTG AAACAGAGTT
  GGACTCAGGA CAAAGGAGTT CATTTTTATA AGACATATAC TATAGATACA ATCTTTTTTT
  W
  ATTTATGGTG GTAAGCTGTC ATGTGCTAAT CTCCTTTAGC CACTGTCCCC AGATCCTAAG
  GAAAGTCATC CAAAACAACA ACCTGAATGG ACAGAGTCAC GTGATCTTGG GTAACAAATT
  CAGTAAAAAG AGGACAAGGA CTAAGATCTG AGTGTCCCTA AGTACTGGTT GTTCATATTT
  TATCCTTGAG TTTGGGAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60417718	NES15921930	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51496159					SNP	A	A	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417718	NES15921930	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68111746 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577985	regulatory region 577985	1769 bp distal
Schip1	schwannomin interacting protein 1	Intron