rs51494780 SNP Detail

Summary

• ID
  rs51494780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143745223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGCTGGT CTGTAAGTCC AGATTTTTAG CTTCTCTGCA
  GTCCAGTTTC TTCCACACCG AGAGAGTCAA TGTTTTCAAC AACAAGGAAA ATATTCTCTC
  Y
  TCCCCATCCC TTTCTTGAAG GGAACATTTT TTATGTTCAT TCTCATTAAT TTTTATGATT
  GGTAAAATAT TTTCATTACA CTAGGCAAAA AGAATCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147774473	ENSMUSSNP6685601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51494780					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143745223 () rs orientation: forward

Symbol	Name	Function Class
Rr566331	regulatory region 566331	1931 bp distal
Rr566332	regulatory region 566332	154 bp proximal
Rr566333	regulatory region 566333	1769 bp proximal