rs51494364 SNP Detail

Summary

• ID
  rs51494364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGGTCAG TCTTTATAAT
  CTGAATCATG TGTGTGTTTG CAGGGCAAGA GAATTGAGCA TAAAACAGAT TTCATGTGTG
  GCCCCAGCAC TGTTTTCCTG TTTTCTTATG GGTTTATTCT GTCAGAATCA TCAGTTGAAC
  ACTTGTAAGC CATGGGATAG GTGAAGCAGG TCTGTGAGCT TCTTTTCTTT TCTTATTTTG
  K
  CATAACATAA TTGATGGATA TTGCAAGAGA TCCTTTTCCA TTAATACCAG GATATCCTTA
  CCCAAGTCAT TTTAACCTGG AGAAAACTCA GTGCCTGCCA GACACCGTCA ACCTGGGGTT
  GTGCCATATA GAGTGAAGAC ACCTATTTCT CTCACCCTTC AGCCTTGGGA GCCAAATACC
  TGCTTTGATG AGGTCATCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115584	ENSMUSSNP3769403	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320438831	CHEV_2_102397101	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51494364					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387289 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1994 bp proximal