rs51494134 SNP Detail

Summary

• ID
  rs51494134
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTCTTA CCCTGATCTT
  ATATCTATAA AGTCTTAATA CTCTGTGCCT TTTAGGGAAA AGAAGCCACA AGAATCAATC
  AGAAGTGATA TTAGGTTAAT AAATTTATTA GAGCCAAGGG TAAAAGAAAA GAATGTTTCC
  TAAGAAGCAG GGAAATATAA CTATATTCCT CTGTATAGCC ATAGATGATG GTTAGCTTTA
  W
  TGTAGAATCG CCTGGGAAAG AGTCTCAAAA AACTGTCTAT ATTGTATTGG TCTATGGACA
  TGTTTGTGGG GGTTGTCTTA AGTCAGTTAG TCAACGTGGA AAAACACAGC CCACTCTGGG
  TGGCACCATT CCTTGGAAGG GACCCTAAAC TGTACACGAG TGAATAAATA GAACAGAACA
  TACAGGTAAG CAACTGAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961609	ENSMUSSNP6726708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51494134					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104255 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	852 bp proximal
Rr626348	regulatory region 626348	673 bp proximal
Rr626349	regulatory region 626349	1551 bp proximal