rs51494092 SNP Detail

Summary

• ID
  rs51494092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141171042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTTCCA ACCTTCAGGA
  CACTGAAGCC TGAGGTTTCC ATACGATAGG TTGACTGGCC AATAAATCCC TGGGATTACA
  GAATGCACCA CTCCTAGATT TTATTACTAT TATTTATTTA ATGTTTACTT AAATTCTATG
  AGTATTTTGC CTGCATGCTT GTATGTATGT CTAATTCCTG CAAATAGCAG AAGGCATCAG
  R
  TCTCTTGAAA TTGGAGTCAC CATGTGGGTG CCGGGAATCG AAGCCAAGTT CTCTACAAGA
  GCAAAAGTGT CCTTAACCTC TGAGCTATCT CTCCTGCCAG CCCCCTGGCT TTTACCGTGG
  TTTTCAAGAT AGAGCTTGTG TAGCAAGCAA GCACTTGTGC CACTGACCTG GCCCGCGGGT
  CAGTAAACAG GGTCTGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737186	ENSMUSSNP1355147	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51494092					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141171042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	750 bp proximal
Gm42337	predicted gene, 42337	255 bp downstream
Rr603768	regulatory region 603768	465 bp proximal
Rr603769	regulatory region 603769	934 bp proximal
Rr603770	regulatory region 603770	1374 bp proximal
Tssr40079	transcription start site region 40079	926 bp upstream
Tssr44320	transcription start site region 44320	1698 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	942 bp upstream