rs51493626 SNP Detail

Summary

• ID
  rs51493626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41360958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAATTCT GTTTTCTGAA
  TTATTAACCC TAAGACATTT TAGTGGTTGA CCATTTAATT TTGCAAAGTC TAATTCATTT
  TTAATTCAGT AGCCATCATT GATAGAAACA AATGACTTGC AATGCTGTCT TTGGTCTTTT
  AATTTGGTTG GGCAAGTAAA GAGTAACACG TGGCCATTAC TGGCAGGTAT GTTTACATAC
  S
  CAACAGTAGT GACCTTTAAG ATCATGTGAG TCCCGGCTGT CATGTAGCAT GTTATACGAT
  CACTGTGTCT CTATTCTGGG TGCGGTCTTG CATGGATGTG TTTGCCATAC TGCATGTCTT
  TGCTTTTTAC TCAGTCTTCT TGGATCCATT TTCCCAATGC CTCGTGTAAT CTATGCTATG
  GCGGAGGATG GGTTGCTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60600950	NES16305521	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51493626					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600950	NES16305521	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41360958 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77026	transcription start site region 77026	1640 bp downstream
Tssr77027	transcription start site region 77027	1311 bp downstream
Tssr77028	transcription start site region 77028	1206 bp downstream
Tssr77029	transcription start site region 77029	1036 bp downstream
Tssr77030	transcription start site region 77030	10 bp downstream
Tssr77031	transcription start site region 77031	125 bp upstream
Tssr77032	transcription start site region 77032	484 bp upstream
Tssr77033	transcription start site region 77033	747 bp upstream
Tssr77034	transcription start site region 77034	810 bp upstream
Tssr77035	transcription start site region 77035	1741 bp upstream